BIP Toolbox Overview


Toolbox Overview	BIP Toolbox Overview The BIP Toolbox is a modular bioinformatics pipeline. The goal is to create a system for the storage and analysis of various types of biological sequence data. Each module performs at least one type of analysis or a group of related analysis steps. All data is stored in a database for retrieval and further analysis. Data These databases contain the following data : Transcript ID mRNA/cDNA/EST sequence CDS region Functional annotation Library/tissue information Alignment to the genome, including exon/intron structure Transcript clustering The data can be retrieved based on criteria provided as an SQL query. Example queries are: Select all transcripts which match a particular functional annotation Select all transcripts from a given tissue Select all transcript clusters which have member transcripts from a given set of tissues/libraries.
BIP Module Graphical Overview
BIP-Splice Pipeline
BIP on a Mediator Platform


Last updated: 12/12/2006

The BIP Toolbox is a modular bioinformatics pipeline. The goal is to create a system for the storage and analysis of various types of biological sequence data. Each module performs at least one type of analysis or a group of related analysis steps. All data is stored in a database for retrieval and further analysis.

Data
These databases contain the following data :

Transcript ID
mRNA/cDNA/EST sequence
CDS region
Functional annotation
Library/tissue information
Alignment to the genome, including exon/intron structure Transcript clustering

The data can be retrieved based on criteria provided as an SQL query. Example queries are:

Select all transcripts which match a particular functional annotation
Select all transcripts from a given tissue
Select all transcript clusters which have member transcripts from a given set of tissues/libraries.

BIP Toolbox Overview

Data These databases contain the following data :

Data
These databases contain the following data :